CDS

Accession Number TCMCG006C00344
gbkey CDS
Protein Id XP_022576296.1
Location join(2665470..2665736,2665805..2665855,2665946..2666028,2666535..2666592,2666694..2666772,2666902..2667025,2667459..2667565,2667676..2667804,2667924..2667988,2668102..2668266,2668442..2668602,2668747..2668778,2669074..2669249,2669350..2669429,2669656..2669721,2669889..2670178,2670418..2670525,2670609..2670706,2671083..2671143,2671242..2671318,2671424..2671495,2671577..2671653,2671745..2671825,2672188..2672290,2672443..2672601,2672773..2673171)
Gene LOC106346374
GeneID 106346374
Organism Brassica napus

Protein

Length 1055aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022720575.1
Definition tRNA ligase 1-like isoform X2 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category S
Description atrnl,rnl
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000281        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0000910        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003972        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008356        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0008452        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010069        [VIEW IN EMBL-EBI]
GO:0010070        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010928        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042245        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0061640        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATGCTCCATCTGGATCTAGTGATCGTGCTACATTCATTGCTGCAGAAGCAGTAAACAACCAATTTGGTGGGTTGACTCTTGAGGAAAGCAACCACAGTGTCCAAAATCCTAAGTCATATGGAGCCATTAGTGGATCGTCGTCTTCGGCATCAGAACTCGTTAATTACTTGGAAGATTTTACGGTGGACAAGTCCACTTATTGTCGTGCCAAGATCAGAGCCACTTTCTATCCGAAGTTTGAGAATGAAAAGACTGACCAAGAGATAAGAACACGGATGATTGAGATGGTGTCTAAAGGGTTGGCAACGCTTGAGGTCTCTCTTAAGCACTCAGGCTCTCTCTTTATGTACGCCGGTCACACGGGTGGAGCATATGCAAAGAACAGTTTTGGTAACATGGAAGCTTGGGGAACTAAGGCGTTAGAAAAGGAGGCAGAATTTAATGATTTTCTTGAGACAAATCGCATGTGTGTATCTATGGAACTGGTAACAGCTGTTCTCGGAGATCATGGTCAACGCCCAGTGGATGACTATGTGGTAGTGACGGCTGTTACCGAGTTAGGTAATGGTAAGCCCAAGTTCTATTCAACTTCCGAAATCATTGCATTTTGCCGGATCTGGCGTCTACCAACCAATCATGTTTGGCTGTTTTCCACAAGGAAATCAGTGACCTCTTTTTTCGCCGCATTTGATGCACTCTGCGAAGAAGGGATAGCAACCTCAGTTTGTAGAGCTCTTGATGAAGTAGCTGATATATCCGTCCCAGGCTCCAAGGACCATGTGAAGGTGCAGGGTGAGATATTAGAGGGTCTTGTGGCGCGTATCGTGAGCAGTGGGAGCGCCAGAGATATGGAAAATGTCTTGAGAGATCATCCTCGACCAACCTGTGATGGAGCTAATCTTGCTCTGGGTCTCAGTTTAAGAGAGATATGTGCTGCCAATAGATGTAACGAGGAACAGCAAATAAGAGCGCTTTTAACGAGTGTGGGGCCTAGCTTTTGCCCCAGTGACTTGGATTGGTTTGGAGATGATTCTGTAGAATCTCATTCGAAAAATGCTGACAAATCTGTTATAACAAAATTTCTGGAATCTCAGCCTGCAGATTATACGACTAGTAAACTACAGGAAATGGTTCGCTTGATGAAGGAAAGACGTCTTCCAGCCGCATTCAAGTGTTACCAGAATTTTCATAGAGCTAATGACGTATCACCTGACAACCTATTTTATAAATTGGTTGACCATGTGCACAGTGATTCAGGATTTAGGCGTTACCAGAAAGAGATGAGGAATATGCCTGGCTTGTGGCCTTTATATCGAGGTTTCTTTGTTGATATTAATTTGCTCAAGGCAAACAAAGGGAGGGATCCGATGGCTATGGAAAGCATTGATAAAGCGGTCAAAGATGCCGGTGAAAATTGTGGTCAACAAGGAAAGGATGGTTTGGATGATGCTGATGCTAACTTAATGATCAAATTGAAGTTTCTCACATACAAGTTGAGAACCTTTCTGATCCGCAATGGCCTATCAGTTCTATTTAAAGAGGGGCCAGCATCTTATAAAGTCTTCTACCTGAGGCAAATGAAAATATGGGGTACTTCAGATGGAAAGCAGAAAGAAATTTGCAAGATGCTTGATGAATGGGCTGCTCACATAAGAAAAAAATGTGGGAATAAGCAGCTATCCTCATCACTATATCTAAGCGAAGTTGAACCATTCCTGGAGCAGTACGCCCAACGGAGCCCAAAGAATCAGGGTTTGATAGGGTCTGCCGGGAATCAAGTCAGAGCTGAGGACTTCTTGGCCATTGTTGACGGTGATCTAGTTGAAGAAGGCGATCTTGTGAAGAAAGAGAGAGGGACACCAGCTACTCCTGAGCCAGCTGTGAAGAAAGCTGTGCAGAAGGATGGGGGGTTAATTGTATTCTTTCCAGGAATTCCTGGAAGTGCTAAATCTGCACTTTGTAAGGAGTTATTGAACGCCCCAGGTGGCTTAGGAGATGGTATGCCAGTGCATAGTCTGATGGGTGATCTTGTCAAAGGAAAATATTGGCCAAAGGTTGCTGATGAATGTCGTAAAATGCCACAATCAATTATGTTGGCGGACAAAAATGCCCCAAATGAAGACGTCTGGAGACAGATTGAAGACATGTGTCGGAGAACTAAAGCTACTGGGGTTCCAGTTGTTGCTGATTCCGAAGGAACCGAGTCAAATCCATATTCACTTGATGCCTTGGCTGTTTTCATATTCCGTGTACTTCAAAGAGTTAACCACCCGGGGAATCTCGACAAGTCATCTTCGAATGCAGGCTATGTGATATTGATGTTTTACCACCTCTATGACGGAAAGAACCGCAAAGAATTTGAAGGTGAATTGATTGAGCGCTTTGGCTCCCTCGTCAAGATACCACTGTTGAGATCAGACAGGAGTCCTTTACCTGTCCCTGTCAAATCGATTCTTGAGGAGGGCATTGACTTGTTCCAGCTCCACAGTAGAAGGCATGGGAGACTTGAGTCGGCGAAAGGAACATATGCAGTGGAATGGACTAAATGGGAGAAACAGCTGCGCAGTACTTTAATTGCAAATTCGGAGTATCTCAACTCTGTTCAGGTTCCGTTTGAGTCTGCGGTTCAACAAGTGCGAGAAGAGCTAAAAAGAATCGCAAAGGGTGAATACAAACCACCAAGTTCAGAGAAAACAAAACATGGGTCTATTACATTCGCTGCCATCAACTTGCCTGTAACTCAAGTCCACAGTCTTCTTGAAAAGTTAGCCGTCTCAAACCCAACGATGAGATCTTTTCTAGAGGGAAAGAAGAAGAGCATAGAGGAAAAACTTGAACGGGCTCACGTGACCCTTGCTCACAAGAGAAGCCACGGAGTAGCAGCTGTAGCCAGATACGGTCAGCACTTAAACAGAGAGGTACCCATACAGCTCACGGAGCTCATCTTCAACGACAACATGGCTGCTTTTACAGCCCATGTCGGATCTGTAGACGGAGAGACCATAGTTTCCAAGAACGAATGGCCACATGTTACGTTGTGGACTGCAGAAGGCGTTACTGCCAGAGAAGCAAACACGTTACCTCAGCTTTACGCAGACGGAAAGGCAAGCCGCATGGTGATAGATCCTCCTGCCTCAGTCTCAGGTCCCCTGGAGTTTTTCTGA
Protein:  
MDAPSGSSDRATFIAAEAVNNQFGGLTLEESNHSVQNPKSYGAISGSSSSASELVNYLEDFTVDKSTYCRAKIRATFYPKFENEKTDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHTGGAYAKNSFGNMEAWGTKALEKEAEFNDFLETNRMCVSMELVTAVLGDHGQRPVDDYVVVTAVTELGNGKPKFYSTSEIIAFCRIWRLPTNHVWLFSTRKSVTSFFAAFDALCEEGIATSVCRALDEVADISVPGSKDHVKVQGEILEGLVARIVSSGSARDMENVLRDHPRPTCDGANLALGLSLREICAANRCNEEQQIRALLTSVGPSFCPSDLDWFGDDSVESHSKNADKSVITKFLESQPADYTTSKLQEMVRLMKERRLPAAFKCYQNFHRANDVSPDNLFYKLVDHVHSDSGFRRYQKEMRNMPGLWPLYRGFFVDINLLKANKGRDPMAMESIDKAVKDAGENCGQQGKDGLDDADANLMIKLKFLTYKLRTFLIRNGLSVLFKEGPASYKVFYLRQMKIWGTSDGKQKEICKMLDEWAAHIRKKCGNKQLSSSLYLSEVEPFLEQYAQRSPKNQGLIGSAGNQVRAEDFLAIVDGDLVEEGDLVKKERGTPATPEPAVKKAVQKDGGLIVFFPGIPGSAKSALCKELLNAPGGLGDGMPVHSLMGDLVKGKYWPKVADECRKMPQSIMLADKNAPNEDVWRQIEDMCRRTKATGVPVVADSEGTESNPYSLDALAVFIFRVLQRVNHPGNLDKSSSNAGYVILMFYHLYDGKNRKEFEGELIERFGSLVKIPLLRSDRSPLPVPVKSILEEGIDLFQLHSRRHGRLESAKGTYAVEWTKWEKQLRSTLIANSEYLNSVQVPFESAVQQVREELKRIAKGEYKPPSSEKTKHGSITFAAINLPVTQVHSLLEKLAVSNPTMRSFLEGKKKSIEEKLERAHVTLAHKRSHGVAAVARYGQHLNREVPIQLTELIFNDNMAAFTAHVGSVDGETIVSKNEWPHVTLWTAEGVTAREANTLPQLYADGKASRMVIDPPASVSGPLEFF